Protein ZmHB107 | |
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Information | |
TF Name: | ZmHB107 |
Species: | Maize |
TF Family: | Homeobox |
Gene Name(Synonym): | HB107 |
Uniprot ID: | A0A1D6PDQ1 |
Subgenome: | 2 |
ZmHB107 is a protein in the Homeobox family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.
Overview of domains present in v5 transcripts | |
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PF00046 | |
Zm00001eb107800_T002 | |
Zm00001eb107800_T001 |
Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
---|---|---|---|---|---|
Zm00001d006687 | DAPseq | sequence | fimo | position | |
Zm00001d006687 | DAPseq | sequence | fimo | position | |
Zm00001d006687 | ChIPseq | sequence | fimo | position | |
Zm00001d006687 | PChIPseq | sequence | fimo | position |
MEQYDGLFPSAYADSSSSLLMPNGSKAQGERPRARRRRRRAAWCGGGELDGGGDPKKRRLSDEQAEMLELSFREERKLET
GRKVHLAAELGLDPKQVAVWFQNRRARHKSKLLEEEFAKLKQAHDATILHKCHLENEVIVILPCPHMIDSVAHRPAGHTC
THVLLLTLLSELRSSSAHRLHGGIAVYTDTEHFVGACIGAYMAVDEGEGQTGARRGGAGALPIRGEPRHLRRWRRRHDGS
CRLQREPELIVLDRHLPAAGGRRPALLS
MEQYDGLFPSAYADSSSSLLMPNGSKAQGERPRARRRRRRAAWCGGGELDGGGDPKKRRLSDEQAEMLELSFREERKLET
GRKVHLAAELGLDPKQVAVWFQNRRARHKSKLLEEEFAKLKQAHDATILHKCHLENEVIVILPCPHMIDSVAHRPAGHTC
THVLLLTLLSELRSSSAHRLHGGIAVYTDTEHFVGACIGAYMAVDEGEGQTGARRGGAGALPIRGEPRHLRRWRRRHDGS
CRLQREPELIVLDRHLPAAGGRRPALLS
MEQYDGLFPSAYADSSSSLLMPNGSKAQGERPRARRRRRRAAWCGGGELDGGGDPKKRRLSDEQAEMLELSFREERKLET
GRKVHLAAELGLDPKQVAVWFQNRRARHKSKLLEEEFAKLKQAHDATILHKCHLENEVIVILPCPHMIDSVAHRPAGHTC
THVLLLTLLSELRSSSAHRLHGGIAVYTDTEHFVGACIGAYMAVDEGEGQTGARRGGAGALPIRGEPRHLRRWRRRHDGS
CRLQREPELIVLDRHLPAAGGRRPALLS
MEQYDGLFPSAYADSSSSLLMPNGSKAQGERPRARRRRRRAAWCGGGELDGGGDPKKRRLSDEQAEMLELSFREERKLET
GRKVHLAAELGLDPKQVAVWFQNRRARHKSKLLEEEFAKLKQAHDATILHKCHLENEVIVILPCPHMIDSVAHRPAGHTC
THVLLLTLLSELRSSSAHRLHGGIAVYTDTEHFVGACIGAYMAVDEGEGQTGARRGGAGALPIRGEPRHLRRWRRRHDGS
CRLQREPELIVLDRHLPAAGGRRPALLS
MEQYDGLFPSAYADSSSSLLMPNGSKAQGERPRARRRRRRAAWCGGGELDGGGDPKKRRLSDEQAEMLELSFREERKLET
GRKVHLAAELGLDPKQVAVWFQNRRARHKSKLLEEEFAKLKQAHDATILHKCHLENEVIVILPCPHMIDSVAHRPAGHTC
THVLLLTLLSELRSSSAHRLHGGIAVYTDTEHFVGACIGAYMAVDEGEGQTGARRGGAGALPIRGEPRHLRRWRRRHDGS
CRLQREPELIVLDRHLPAAGGRRPALLS
MEQYDGLFPSAYADSSSSLLMPNGSKAQGERPRARRRRRRAAWCGGGELDGGGDPKKRRLSDEQAEMLELSFREERKLET
GRKVHLAAELGLDPKQVAVWFQNRRARHKSKLLEEEFAKLKQAHDATILHKCHLENEVIVILPCPHMIDSVAHRPAGHTC
THVLLLTLLSELRSSSAHRLHGGIAVYTDTEHFVGACIGAYMAVDEGEGQTGARRGGAGALPIRGEPRHLRRWRRRHDGS
CRLQREPELIVLDRHLPAAGGRRPALLS
Secondary Structure Color Code | |
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BEND | region with high backbone curvature without specific hydrogen bonding |
HELX_LH_PP_P | left-handed polyproline helix |
HELX_RH_3T_P | right-handed 3-10 helix |
HELX_RH_AL_P | right-handed alpha helix |
HELX_RH_PI_P | right-handed pi helix |
STRN | beta strand |
TURN_TY1_P | type I turn |
UNDETERMINED | no data available |
Domains Present | |
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PF00046 |
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PF00046 |
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Hover here to show all domains |
GTCCTTTGCCCTCTCCAGATAACCC...
GTCCTTTGCCCTCTCCAGATAACCCTCACGCTTCACAAGGAGAGAGAAAGGCGTAGCACACAGCCACACAGCACGTAGCAGCTGATCCGCCCGGCCGGGAGCGCAGGCAAAGGATGGAGCAATACGACGGACTCTTTCCTTCCGCCTACGCGGACTCCTCCTCATCCCTCCTGATGCCCAACGGCAGCAAGGCGCAGGGGGAGAGGCCGAGAGCGCGGCGCAGGAGGCGTCGAGCAGCGTGGTGCGGCGGCGGCGAGCTGGACGGGGGAGGGGACCCCAAGAAGCGGCGGCTGAGCGACGAGCAGGCAGAGATGCTGGAGCTGAGCTTCCGGGAGGAGCGGAAGCTGGAGACGGGCCGGAAGGTGCACCTGGCCGCCGAGCTCGGGCTCGACCCCAAGCAGGTCGCCGTCTGGTTCCAGAACCGCCGCGCCCGCCACAAGAGCAAGCTGCTCGAGGAGGAGTTCGCCAAGCTCAAGCAGGCACACGACGCCACCATCCTCCACAAATGCCACCTTGAGAACGAGGTAATAGTAATACTGCCCTGCCCGCACATGATCGACAGTGTGGCACACCGGCCGGCCGGCCACACATGCACGCACGTCCTCCTCCTAACTCTTTTGTCTGAGCTCCGATCCTCTTCTGCTCATCGTCTCCATGGAGGTATTGCAGTGTATACTGATACTGAGCATTTCGTGGGTGCGTGCATCGGTGCATATATGGCAGTTGATGAGGGTGAAGGACAGACTGGTGCTCGCCGAGGAGGAGCTGGCGCGCTTCCGATCCGTGGGGAGCCACGCCATCTCCGGCGATGGCGGAGACGCCATGATGGGTCGTGCCGTCTGCAGCGGGAGCCCGAGCTCATCGTTCTCGACAGGCACCTGCCAGCAGCCGGGGGACGACGACCTGCTCTACTTTCCTGACTATGCCTACGCTGACAACAGCGTGGTCGACGAGTGGTTTCGCATGTATGGACTGATGTAAGCCAAGTGATCAGTGATGATGGATGGTATGCCATTGATGTTCTATTTGTGCTGAACTGCTTATTAATCATATGTACATAAATCAAGTTATTAGTGGTAAAATATAGC
MEQYDGLFPSAYADSSSSLLMPNGAHSKAQGERPRARRRRRRAAWCGGGELDGGGDPKKRRLSDEQAEMLELSFREERKL
ETGRKVHLAAELGLDPKQVAVWFQNRRARHKSKLLEEEFAKLKQAHDATILHKCHLENELMRVKDRLVLAEEELARFRSV
GSHAISGDGGDAMMGRAVCSGSPSSSFSTGTCQQPGDDDLLYFPDYAYADNSVVDEWFRMYGLM
ATGGAGCAATACGACGGACTCTTTC...
ATGGAGCAATACGACGGACTCTTTCCTTCCGCCTACGCGGACTCCTCCTCATCCCTCCTGATGCCCAACGGTGCGCACTCCAAGGCGCAGGGGGAGAGGCCGAGAGCGCGGCGCAGGAGGCGTCGAGCAGCGTGGTGCGGCGGCGGCGAGCTGGACGGGGGAGGGGACCCCAAGAAGCGGCGGCTGAGCGACGAGCAGGCAGAGATGCTGGAGCTGAGCTTCCGGGAGGAGCGGAAGCTGGAGACGGGCCGGAAGGTGCACCTGGCCGCCGAGCTCGGGCTCGACCCCAAGCAGGTCGCCGTCTGGTTCCAGAACCGCCGCGCCCGCCACAAGAGCAAGCTGCTCGAGGAGGAGTTCGCCAAGCTCAAGCAGGCACACGACGCCACCATCCTCCACAAATGCCACCTTGAGAACGAGTTGATGAGGGTGAAGGACAGACTGGTGCTCGCCGAGGAGGAGCTGGCGCGCTTCCGATCCGTGGGGAGCCACGCCATCTCCGGCGATGGCGGAGACGCCATGATGGGTCGTGCCGTCTGCAGCGGGAGCCCGAGCTCATCGTTCTCGACAGGCACCTGCCAGCAGCCGGGGGACGACGACCTGCTCTACTTTCCTGACTATGCCTACGCTGACAACAGCGTGGTCGACGAGTGGTTTCGCATGTATGGACTGATGTAA
MEQYDGLFPSAYADSSSSLLMPNGSKAQGERPRARRRRRRAAWCGGGELDGGGDPKKRRLSDEQAEMLELSFREERKLET
GRKVHLAAELGLDPKQVAVWFQNRRARHKSKLLEEEFAKLKQAHDATILHKCHLENELMRVKDRLVLAEEELARFRSVGS
HAISGDGGDAMMGRAVCSGSPSSSFSTGTCQQPGDDDLLYFPDYAYADNSVVDEWFRMYGLM
GAAAGGCGTAGCACACAGCCACACA...
GAAAGGCGTAGCACACAGCCACACAGCACGTAGCAGCTGATCCGCCCGGCCGGGAGCGCAGGCAAAGGATGGAGCAATACGACGGACTCTTTCCTTCCGCCTACGCGGACTCCTCCTCATCCCTCCTGATGCCCAACGGCAGCAAGGCGCAGGGGGAGAGGCCGAGAGCGCGGCGCAGGAGGCGTCGAGCAGCGTGGTGCGGCGGCGGCGAGCTGGACGGGGGAGGGGACCCCAAGAAGCGGCGGCTGAGCGACGAGCAGGCAGAGATGCTGGAGCTGAGCTTCCGGGAGGAGCGGAAGCTGGAGACGGGCCGGAAGGTGCACCTGGCCGCCGAGCTCGGGCTCGACCCCAAGCAGGTCGCCGTCTGGTTCCAGAACCGCCGCGCCCGCCACAAGAGCAAGCTGCTCGAGGAGGAGTTCGCCAAGCTCAAGCAGGCACACGACGCCACCATCCTCCACAAATGCCACCTTGAGAACGAGTTGATGAGGGTGAAGGACAGACTGGTGCTCGCCGAGGAGGAGCTGGCGCGCTTCCGATCCGTGGGGAGCCACGCCATCTCCGGCGATGGCGGAGACGCCATGATGGGTCGTGCCGTCTGCAGCGGGAGCCCGAGCTCATCGTTCTCGACAGGCACCTGCCAGCAGCCGGGGGACGACGACCTGCTCTACTTTCCTGACTATGCCTACGCTGACAACAGCGTGGTCGACGAGTGGTTTCGCATGTATGGACTGATGTAAGCCAAGTGATCAGTGATGATGGATGGTATGCCATTGATGTTCTATTTGTGCTGAACTGCTTATTAATCATATGTACATAAATCAAGTTATTAGTGGTAAAATATAGCCAGCTAGC
MLELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHKSKLLEEEFAKLKQAHDATILHKCHLENELMRVKDRLV
LAEEELARFRSVGSHAISGDGGDAMMGRAVCSGSPSSSFSTGTCQQPGDDDLLYFPDYAYADNSVVDEWFRMYGLM
GTAGCTAGCTAGTTCGTCTCTGCAA...
GTAGCTAGCTAGTTCGTCTCTGCAAATGCAACTGCAGCTCGTCGCAGCAAGGCGCAGGGGGAGAGGCCGAGAGCGCGGCGCAGGAGGCGTCGAGCAGCGTGGTGCGGCGGCGGCGAGCTGGACGGGGGAGGGGACCCCAAGAAGCGGCGGCTGAGCGACGAGCAGGCAGAGATGCTGGAGCTGAGCTTCCGGGAGGAGCGGAAGCTGGAGACGGGCCGGAAGGTGCACCTGGCCGCCGAGCTCGGGCTCGACCCCAAGCAGGTCGCCGTCTGGTTCCAGAACCGCCGCGCCCGCCACAAGAGCAAGCTGCTCGAGGAGGAGTTCGCCAAGCTCAAGCAGGCACACGACGCCACCATCCTCCACAAATGCCACCTTGAGAACGAGTTGATGAGGGTGAAGGACAGACTGGTGCTCGCCGAGGAGGAGCTGGCGCGCTTCCGATCCGTGGGGAGCCACGCCATCTCCGGCGATGGCGGAGACGCCATGATGGGTCGTGCCGTCTGCAGCGGGAGCCCGAGCTCATCGTTCTCGACAGGCACCTGCCAGCAGCCGGGGGACGACGACCTGCTCTACTTTCCTGACTATGCCTACGCTGACAACAGCGTGGTCGACGAGTGGTTTCGCATGTATGGACTGATGTAAGCCAAGTGATCAGTGATGATGGATGGTATGCCATTGATGTTCTATTTGTGCTGAACTGCTTATTAATCATA
MEQYDGLFPSAYADSSSSLLMPNGSKAQGERPRARRRRRRAAWCGGGELDGGGDPKKRRLSDEQAEMLELSFREERKLET
GRKVHLAAELGLDPKQVAVWFQNRRARHKSKLLEEEFAKLKQAHDATILHKCHLENELMRVKDRLVLAEEELARFRSVGS
HAISGDGGDAMMGRAVCSGSPSSSFSTGTCQQPGDDDLLYFPDYAYADNSVVDEWFRMYGLM
GTCCTTTGCCCTCTCCAGATAACCC...
GTCCTTTGCCCTCTCCAGATAACCCTCACGCTTCACAAGGAGAGAGAAAGGCGTAGCACACAGCCACACAGCACGTAGCAGCTGATCCGCCCGGCCGGGAGCGCAGGCAAAGGATGGAGCAATACGACGGACTCTTTCCTTCCGCCTACGCGGACTCCTCCTCATCCCTCCTGATGCCCAACGGCAGCAAGGCGCAGGGGGAGAGGCCGAGAGCGCGGCGCAGGAGGCGTCGAGCAGCGTGGTGCGGCGGCGGCGAGCTGGACGGGGGAGGGGACCCCAAGAAGCGGCGGCTGAGCGACGAGCAGGCAGAGATGCTGGAGCTGAGCTTCCGGGAGGAGCGGAAGCTGGAGACGGGCCGGAAGGTGCACCTGGCCGCCGAGCTCGGGCTCGACCCCAAGCAGGTCGCCGTCTGGTTCCAGAACCGCCGCGCCCGCCACAAGAGCAAGCTGCTCGAGGAGGAGTTCGCCAAGCTCAAGCAGGCACACGACGCCACCATCCTCCACAAATGCCACCTTGAGAACGAGTTGATGAGGGTGAAGGACAGACTGGTGCTCGCCGAGGAGGAGCTGGCGCGCTTCCGATCCGTGGGGAGCCACGCCATCTCCGGCGATGGCGGAGACGCCATGATGGGTCGTGCCGTCTGCAGCGGGAGCCCGAGCTCATCGTTCTCGACAGGCACCTGCCAGCAGCCGGGGGACGACGACCTGCTCTACTTTCCTGACTATGCCTACGCTGACAACAGCGTGGTCGACGAGTGGTTTCGCATGTATGGACTGATGTAAGCCAAGTGATCAGTGATGATGGATGGTATGCCATTGATGTTCTATTTGTGCTGAACTGCTTATTAATCATATGTACATAAATCAAGTTATTAGTGGTAAAATATAGCCAGCTAGC
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